Command line interface

Command line interface to psm_utils.


psm_utils can convert one PSM file type into another. Simply run the psm_utils command with the convert subcommand and specify the input and output filenames. By default, the file types will be inferred from the filename and extensions. File types can also be specified with the input-filetype and output-filetype options.

For instance:

psm_utils convert --input-filetype=maxquant --output-filetype=mzid msms.txt msms_converted.mzid

Run psm_utils convert --help for an overview of all parameters.